Cristina Airoldi - CV
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Cristina Airoldi - CV
Cristina Airoldi – short CV and publication list July 2015 Cristina Airoldi Bergamo, February 13, 1979 via Antonio Gramsci 5/c, 23879, Verderio, LC, ITALY cell. +39 3287184950 tel. +39 02 6448 3422; 3303 [email protected] Academic Education and Training November 2003, MSc in Industrial Biotechnologies at the University of Milano-Bicocca, Department of Biotechnology and Biosciences (Design and synthesis of new potential Ras inhibitors derived from carbohydrates, Mentor Prof. F. Nicotra) – final grade: 110/110 magna cum laude January 2007, PhD in Chemistry at the University of Milano-Bicocca, Department of Biotechnology and Biosciences (Development of new potential antitumor drugs based on Ras protein inhibition, Mentor Prof. F. Nicotra) 2005, stage with Prof. J. Jimenez-Barbero (CIB-CSIC, Madrid, Spain) 2006, stage with Prof. H. Molinari (University of Verona). Employment and Research Experiences Cristina Airoldi received the degree in Industrial Biotechnology discussing an experimental thesis on the design and synthesis of bioactive compounds. She further deepened her scientific knowledge and skills attending a PhD course in Chemistry. During this period, she had the opportunity to complement the synthetic work with the NMR characterization of the interaction between the potential inhibitors she had prepared and the target protein. To this purpose, she reached a European leader group in carbohydrateprotein interaction studies (Prof. J. Jimenez-Barbero’s group, CIB, CSIC, Madrid). Having acquired such new skills, she moved to this new research field, contributing in a fundamental way to the creation and development of a new bio-NMR laboratory at the Dept. of Biotechnology and Biosciences, University of Milano-Bicocca. Now she is responsible for the scientific activity of this lab and for the maintenances of the equipment. From October 1st 2012 she is Assistant Professor of Organic Chemistry at Milano-Bicocca University, Department of Biotechnology and Biosciences. Her current scientific interests focus on (1) the NMR spectroscopy characterization of biologically relevant molecular interactions and recognition processes, with also the support of other techniques, such as circular dicroism, surface plasmon resonance, mass spectrometry, IR spectroscopy and atomic force microscopy, (2) the NMR spectroscopy conformational analysis of bioactive compounds, (3) the application of NMR spectroscopy to the identification of metabolic markers of pathologies by metabolomics studies on cells and biofluids and to the metabolic profiling of food matrices. The most significant result obtained until now is the development of a new NMR methodology, recently 1 Cristina Airoldi – short CV and publication list July 2015 patented, for the characterization of molecular recognition processes working on living cells. This methodology, combining the use of STD experiment and an HR-MAS probe, improves the versatility of the STD experiment and expands its use to samples containing living cells deriving from solid tissues. A second relevant scientific contribution concerns the setup of NMR protocols for the study of the molecular interaction between amyloid peptide oligomers and their ligands (in particular molecules with antiamyloidogenic properties). A very recent research field concerns the application of NMR to metabolomics studies on cells extracts and biofluids for the identification of biomarkers of human pathologies. To date, Cristina Airoldi is author of 45 papers on international journals, 4 scientific book chapters, 3 patents, 1 report concerning the ICSU Symposium “Global Scientific Challenges: Perspectives from Young Scientists”, attended as IUPAC (International Union of Pure and Applied Chemistry) representative, and 100 communications in national and international meetings, among which 18 oral communications. She is first author in 15 papers and corresponding author of 8. H-index: 15. Funding CARIPLO Foundation, project 2013-0820 (3/2014-2/2016): BALf metabolomics in chronic lung rejection: an innovative approach to identify predictive markers and sub-phenotypes. Role: Responsabile for UNIMIB unit. Italian Health Ministry, VIBRIO (12/2014-11/2016): Role of colonization and infection on viral exacerbations and hospitalizations in patients with bronchiectasis. Role: Responsabile for UNIMIB unit. FAR-QC (2015-2016): Targeting of Gastrin-Releasing Peptide receptor expressing tumors: NMR characterization of Bombesin/GRP-R interaction. Role: PI. Awards and Honors: 2007: selected as IUPAC representative at the ICSU Symposium “Global Scientific Challenges: Perspectives from Young Scientists”, April 4-6, Lindau, Germany. 2013: selected for the participation to the 63rd Lindau Nobel Laureates Meeting 2013, 30 June – 5 July 2013, Lindau, Germany, (edition dedicated to Chemistry). In this context she has been also selected by Prof. Wuthrich for an oral communication in his masterclass titled “Magnetic Resonance in Chemistry, Structural Biology and Medical Diagnosis”. 2013: Gastone de Santis Prize, assigned by the Division of Chemistry of Biological Systems of the Italian Chemical Society. 2014: invited to the Bürgenstock Conference 2014. 2015: elected as member of the Steering Committee of the Interdivisional Group of Magnetic Resonances (GIRM) of the Italian Chemical Society (SCI) (2015-2017). 2 Cristina Airoldi – short CV and publication list July 2015 Publications: 1. Peri F., Airoldi C., Colombo S., Martegani E., Van Neuren A. S., Stein M., Marinzi C., Nicotra F., Design, Synthesis and Biological Evaluation of Sugar-Derived Ras Inhibitors, ChemBioChem, 2005, 6, 1839-1848. 2. Peri F., Airoldi C., Colombo S., Mari S., Jimenez-Barbero J., Martegani M., Nicotra F., Sugar-derived Ras inhibitors: Group Epitope Mapping by NMR Spectroscopy and Biological Evaluation, Eur. J. Org. Chem., 2006, 16, 3707-3720. 3. Nicotra F., Airoldi C., Cardona F. Synthesis of C- and S-Glycosides, in Comprehensive Glycoscience, Kamerling J. P. Ed., Elsevier, 2007, 647-683. 4. Cipolla L., Reis Fernandes M., Gregori M., Airoldi C. and. Nicotra F., Synthesis and biological evaluation of a small library of nojirimycin-derived bicyclic iminosugars, Carbohydr. Res., 2007, 342, 12-13, 1813-1830. 5. Airoldi C., Palmioli A., D’Urzo A., Colombo S., Vanoni M., Martegani E., and Peri F., Glucose-derived Ras pathway inhibitors: evidence of Ras-ligand binding and Ras-GEF (Cdc25) interaction inhibition, ChemBioChem, 2007, 8, 1376-1379. 6. Nicotra F., La Ferla B., Airoldi C. Aminated Sugars, Synthesis and Biological Activity, In “Amino Group Chemistry, Ricci A. Ed., Wiley-VCH, 2008, 257-304. 7. Araujo A. C., Nicotra F., Airoldi C., Costa B., Giagnoni G., Fumagalli P., Cipolla L., Synthesis and biological evaluation of novel rigid 1,4-benzodiazepine-2,5-dione chimeric scaffolds, Eur. J. Org. Chem., 2008, 635–639. 8. Cipolla L., Peri F., Airoldi C., Glycoconjugates in cancer therapy. Anti Canc Agents Med Chem, 2008, 8, 1, 92-121. 9. Cipolla L., Airoldi C., Galliani P., Polissi A., Nicotra F., Re LPS biogenetic pathway: Enzyme characterisation and Synthetic efforts towards inhibitors, Curr. Org. Chem., 2008, 12, 7, 576-600. 10. Cipolla L., Araújo A. C., Airoldi C., Bini D., Pyrrolo[2,1-c][1,4]benzodiazepine as a scaffold for the design and synthesis of anti-tumour drugs, Anti Canc Agents Med Chem, 2009, 9, 1, 1-31. 11. Cipolla L., Polissi A., Airoldi C., Galliani P., Sperandeo P. and Nicotra F., The Kdo biosynthetic pathway toward OM biogenesis as target in antibacterial drug design and development, Curr. Drug Discovery Technol., 2009, 6, 1, 19-33. 12. Mueller C., Gomez-Zurita Frau M. A., Ballinari D., Colombo S., Bitto A., Martegani E., Airoldi C., van Neuren A. S., Stein M., Weiser J., Battistini C. and Peri F., Design, Synthesis and Biological Evaluation of Levoglucosenone-derived Ras Activation Inhibitors, ChemMedChem, 2009, 4, 524-528. 13. La Ferla B., Russo L., Airoldi C., Nicotra F., Solid-phase supported mimic of GDP-L-galactose, Tetrahedron: Asymmetry, 2009, 20, 744–745. 14. Palmioli A. Sacco E., Airoldi C., Di Nicolantonio F., D'Urzo A., Shirasawa S., Sasazuki T., Di Domizio A., De Gioia L., Martegani E., Bardelli A., Peri F., Vanoni M., Selective cytotoxicity of a byclic Ras inhibitor in cancer cells expressing K-RasG13D, Biochem. Biophys. Res. Commun., 2009, 386, 593-597. 3 Cristina Airoldi – short CV and publication list July 2015 15. Nicotra F., Cipolla L., La Ferla B., Airoldi C., Zona C., Orsato A., Shaikh N., Russo L., Carbohydrate scaffolds in chemical genetic studies, J. Biotechnol., 2009, 144, 3, 234-241. 16. Airoldi C., Merlo S., Nicotra F., Synthesis of 3-deoxy-D-threopentofuranose 5-phosphate a substrate of arabinose 5-phosphate isomerase, J. Carbohydr. Chem., 2010, 29, 30–38. 17. Airoldi C., Sommaruga S., Merlo S., Sperandeo P., Cipolla L., Polissi A., Nicotra F., Targeting Bacterial Membranes: NMR Spectroscopy Characterization of Substrate Recognition and Binding Requirements of D-arabinose 5 Phosphate Isomerase, Chem. Eur. J., 2010, 16, 6, 1897-1902. 18. Colombo S., Palmioli A., Airoldi C., Tisi R., Fantinato S., Olivieri S., De Gioia L., Martegani E., Peri F., Structure-Activity Studies on Arylamides and Arysulfonamides Ras Inhibitors, Curr. cancer drug targets, 2010, 10, 2, 192-199. 19. Cipolla L., La Ferla B., Airoldi C., Zona C., Orsato A., Shaikh N., Russo L., Nicotra F., Carbohydrate Mimetics and Scaffolds: Sweet Spots in Medicinal Chemistry, Future Med. Chem., 2010, 2, 4, 587-599. 20. Re F., Airoldi C., Zona C., Quattrocchi N., La Ferla B., Nicotra F., Masserini M., Beta Amyloid Aggregation Inhibitors: Small Molecules as Candidate Drugs for Therapy of Alzheimer’s Disease, Curr. Med. Chem., 2010, 17, 27, 2990-3006. 21. Airoldi C., Colombo L., Manzoni C., Sironi E., Natalello A., Doglia S. M., Forloni G., Tagliavini F., Del Favero E., Cantù L., Nicotra F., Salmona M., Tetracycline prevents Aβ oligomer toxicity through an atypical supramolecular interaction, Org. Biomol. Chem., 2011, 9, 463-472. 22. Cipolla L., Airoldi C., Bini D., Gregori M., Marcelo F., Jimenez Barbero J., Nicotra F., Fructose-based proline analogues: exploring the prolyl trans/cis-amide rotamer population in model peptides, Eur. J. Org. Chem. 2011, 128–136. 23. La Ferla B., Airoldi C., Zona C., Orsato A., Cardona F., Merlo S., Sironi E., D’Orazio G., Nicotra F. Natural glycoconjugates with antitumor activity, Nat. Prod. Rep., 2011, 28, 630-648. 24. Cipolla L., Polissi A., Airoldi C., Gabrielli L., Merlo S., Nicotra F., New targets for antibacterial design: Kdo biosynthesis and LPS machinery transport to the cell surface, Curr. Med. Chem., 2011, 18, 830-852. 25. Araújo A. C., P. Rauter A. Nicotra F., Airoldi C., Costa B., Cipolla L., Sugar-Based Enantiomeric and Conformationally Constrained Pyrrolo[2,1-c][1,4]-Benzodiazepines as Potential GABAA Ligands, J. Med. Chem., 2011, 54, 1266-1275. 26. Airoldi C., Sommaruga S., Merlo S., Sperandeo P., Cipolla L., Polissi A., Nicotra F., Targeting Bacterial Membranes: Identification of Pseudomonas aeruginosa D-Arabinose-5P Isomerase and NMR Characterisation of its Substrate Recognition and Binding Properties, ChemBioChem, 2011, 12, 719–727. 27. Airoldi C., Sironi E., La Ferla B., Cardona F., Nicotra F., Aβ monomers, oligomers and fibrils: Structural Features, Curr. Bioact. Compd., 2011, 7, 3, 198-213. 28. Airoldi C., Cardona F., Sironi E., Colombo L., Salmona M., Silva A., Nicotra F., La Ferla B., cis-glycofused benzopyran compounds as new amyloid-β peptide ligands, Chem. Commun., 2011, 47, 10266– 10268. 4 Cristina Airoldi – short CV and publication list July 2015 29. Manzoni C., Colombo L., Bigini B., Diana V., Cagnotto A., Messa M., Lupi M., Bonetto V., Pignataro M., Airoldi C., Sironi E., Williams A., Salmona M., The molecular assembly of amyloid Aβ controls its neurotoxicity and binding to cellular proteins, PlosOne, 2011, 6, 9, e24909. 30. Airoldi C.,* Zona C., Sironi E., Colombo L., Messa M., Aurilia D., Gregori M., Masserini M., Salmona M., Nicotra F., La Ferla B.,* Curcumin derivatives as new ligands of Aβ peptides, J. Biotechnol., 2011, 156, 317-324. 31. Airoldi C.,* Giovannardi S., La Ferla B., Jiménez-Barbero J., Nicotra F.,* Saturation Transfer Difference NMR experiments of membrane proteins in living cells under HR-MAS conditions: The interaction of the SGLT1 cotransporter with its ligands, Chem. Eur. J., 2011, 17, 48, 13395-13399. 32. Chiaradonna F., Moresco R.M., Airoldi C., Gaglio D., Palorini R., Nicotra F., Messa C., Alberghina L., From cancer metabolism to new biomarkers and drug targets, Biotechnol. Adv., 2012, 30, 30-51. 33. Le Droumaguet B., Nicolas J., Brambilla D., Mura S., Maksimenko A., De Kimpe L., Salvati E., Zona C., Airoldi C., Canovi M., Gobbi M., Noiray M., La Ferla B., Nicotra F., Scheper W., Flores O., Masserini M., Andrieux K., Couvreur P., Versatile and Efficient Targeting Using a Single Nanoparticulate Platform: Application to Cancer and Alzheimer's Disease, ACSNano, 2012, 6, 7, 58665879. 34. Airoldi C.,* Merlo S., Sironi E., Nicotra F., Jiménez-Barbero J.,* NMR Protein-Ligand Interaction Studies under Non-Homogeneous Conditions for Biomaterial Generation: A Model For Artificial LectinCarbohydrate Recognition, J. Mater. Sci. Eng. B, 2012, 2 , 12, 618-625. 35. Airoldi C.,* Sironi E., Dias C., Marcelo F., Martins A., Rauter A. P., Nicotra F., Jimenez-Barbero J., Natural Compounds against Alzheimer´s Disease: Molecular Recognition of Aβ1–42 Peptide by Salvia sclareoides Extract and its Major Component, Rosmarinic Acid, as Investigated by NMR, Chem. Asian J., 2013, 8, 3, 596-602. 36. Airoldi C., Cardona F., Sironi E., Colombo L., Salmona M., Cambianica I., Ornaghi F., Sancini G., Nicotra F., La Ferla B., Fluorescent amyloid β-peptide ligand derivatives as potential diagnostic tools for Alzheimer’s disease, Pure Appl. Chem., 2013, 85, 9, 1813-1823. 37. Gabrielli L., Airoldi C., Sperandeo P., Gianera S., Polissi A., Nicotra F., Cipolla L., Phosphonate analogues of arabinose 5-phosphate: putative ligands for arabinose 5-phosphate isomerases?, 2013, Eur. J. Org. Chem., 34, 7776–7784. 38. Gabrielli L., Merlo S., Airoldi C., Sperandeo P., Gianera S., Polissi A., Nicotra F., Holler T. P., Woodard R. W. Cipolla L., Arabinose 5-phosphate isomerase as a target for antibacterial design: studies with substrate analogues and inhibitors, Bioorg. Med. Chem., 2014, 22, 8, 2576-2583. 39. Cipolla L., Airoldi C., Sperandeo P., Gianera S., Polissi A., Nicotra F., Gabrielli L., Synthesis and biological evaluation of arabinose 5-phosphate mimics modified at position five, Carb. Res, 2014, in press. 40. Merlo S., Sironi E., Colombo L., Cardona F., Martorana A. M., Salmona M., La Ferla B., Airoldi C.* Cis-glyco-fused benzopyran compounds as hit compounds for the development of new therapeutic and 5 Cristina Airoldi – short CV and publication list diagnostic tools against 10.1002/cplu.201400035. July 2015 neurodegenerative invited for a diseases, special issue ChemPlusChem, title “Early 2014, Career DOI: Series” http://onlinelibrary.wiley.com/journal/10.1002/(ISSN)2192-6506/homepage/2688_earlycareer.html 41. La Ferla B., Airoldi C., D’Orazio G., 2014, “Curcumin derivatives: Aβ-ligands as potential diagnostic and therapeutic tools for Alzheimer disease”. In Curcumin, Synthesis, Emerging Role in Pain Management and Health Implications (pp. 87-101). Daniel Loic Pouliquen. 42. Airoldi C., Mourtas S., Cardona F., Zona C., Sironi E., D’Orazio G., Markoutsa E., Nicotra F., Antimisiaris S. G., La Ferla B., Nanoliposomes presenting on surface a cis-glycofused benzopyran compound display binding affinity and aggregation inhibition ability towards Amyloid β 1-42 peptide, Eur. J. Med. Chem., 2014, 85, 43-50. 43. Sironi E., Colombo L., Lompo A., Messa M., Bonanomi M., Regonesi M. E., Salmona M., Airoldi C.*, Natural compounds against neurodegenerative diseases: molecular characterization of the interaction of catechins from green tea with Aβ1-42, PrP106-126 and ataxin-3 oligomers, Chem. Eur. J., 2014, 20, 13793–13800. 44. Jesus A. R., Dias C., Matos A. M., de Almeida R. F. M., Viana A. S., Marcelo F., Ribeiro R. T., Macedo M. P., Airoldi C., Nicotra F., Martins A., Cabrita E. J., Jiménez-Barbero J., Pilar Rauter A., 8-β-DGlucopyranosylgenistein: Synthesis, Antidiabetic Activity and Molecular Interaction with Islet Amyloid Polypeptide and Amyloid β-Peptide (1-42), J. Med. Chem., 2014, 57, 9463–9472. 45. Airoldi C.*, Tripodi F., Guzzi G., Nicastro R., Coccetti P.*, NMR analysis for budding yeast metabolomics: a rapid method for sample preparation, Mol. BioSyst., 2015, 11, 379-383. 46. Airoldi C.*, Merlo S., Sironi E., NMR molecular recognition studies for the elucidation of protein and nucleic acid structure and function, in e-Book Series on Applications of NMR Spectroscopy Volume 2", editors: Prof. Dr. Atta-ur-Rahman, Prof. M. Iqbal Choudhary, Bentham Science Publishers, USA, 2015, 147-219; DOI: 10.2174/97816080596521150201. 47. Nicastro R. Tripodi F., Guzzi C., Reghellin V., Khoomrung S., Capusoni C., Compagno C., Airoldi C., Nielsen J., Alberghina L., Coccetti P., Enhanced amino acid utilization sustains growth of cells lacking Snf1/AMPK, BBA - Molecular Cell Research, 2015, 1853, 7, 1615–162510.1016/j.bbamcr.2015.03.014. 48. Gallo V., Intini N., Mastrorilli P., Latronico M., Scapicchio P., Triggiani M., Bevilacqua V., Fanizzi P., Acquotti D., Airoldi C., Arnesano F., Assfalg M., Benevelli F., Bertelli D., Cagliani L. R., Casadei L., Cesare Marincola F., Colafemmina G., Consonni R., Cosentino C., Davalli S., Angelica S., De Pascali, D'Aiuto V., Faccini A., Gobetto R., Lamanna R., Liguori F., Longobardi F., Mallamace D., Mazzei P., Menegazzo I., Milone S., Mucci A., Napoli C., Pertinhez T. A., Rizzuti A., Rocchigiani L., Schievano E., Sciubba F., Sobolev A. S., Tenori L., Valerio M., Performance assessment in fingerprinting and multi component quantitative NMR analyses, Anal. Chem., 2015, 87, 6709–6717. 49. Datta A., Ghosh A., Airoldi C., Sperandeo P., Mroue K., Jimenez-Barbero J., Kundu P., Ramamoorthy a., De Novo Design of Antimicrobial Peptides: Insights into Membrane Permeabilization, 6 Cristina Airoldi – short CV and publication list July 2015 Lipopolysaccharide Fragmentation and Application in Plant Disease Control, Scientific reports, 2015, Scientific Reports 5, Article number: 11951. *corresponding author Patents: 1. Nicotra F., Airoldi C., La Ferla B., Jimenez-Barbero J., Giovannardi S., NMR based method with HRMAS probe on intact cells. 2010, RM2010A000647; 2011, WO/2012/077087. 2. Nicotra F., Masserini M., La Ferla B., Airoldi C., Cardona F., Sironi E., New tricyclic compounds, process for their manufacture and their use as ligands of the beta amyloid peptides. 2011, RM2011A00026; 2012, WO 2012164476 A1. 3. Grases Santos Silva Rauter A. P., Xavier de Jesus A. R., Mendes Martin A. I., dos Santos Dias C. A., Tavares Ribeiro R. J., Borges de Lemos Macedo M. P., Guerra Justino J. A., Mota Filipe H. D., Amaro Pinto R. M., Nogueira Sepodes B. M., Patrício Goulart de Medeiros M. A., Jimenéz Barbero J., Airoldi C., Nicotra F. New C-glycosylpolyphenol antidiabetic agents, effect on glucose tolerance and interaction with beta-amyloid. Therapeutic applications of the synthesized agent(s) and of Genista tenera ethyl acetate extracts containing some of those agents, 2012, PT106202; 2013, WO 2013132470 A2. Other publications: Airoldi C., Global Scientific Challenges: Perspectives from Young Scientists, Chemistry International - The News Magazine of the International Union of Pure and Applied Chemistry (IUPAC), 2007, 28, 5, 24-26. 7